If you do the change in Luci, after you hit the save and apply button, there will be a timer for rollback. If you break the network somehow and the PC cannot communicate with OpenWrt, the rollback will restore the previous working configuration.
I think that since you have ports connected on different ports of the CPU you cannot just assign them all in the same VLAN. What I would do is to delete the wan interface and add the eth1.2 physical interface in the lan interface along with eth0.1
You can leave VLAN 2 in place with only port 6 remaining attached to it. Of course a switch VLAN with only one active port can't actually pass any traffic, but it is a legal configuration.
It's a good idea to connect by wifi while doing this so even if you totally mess up the Ethernet ports you don't lose access to fix it.